rs29973612 SNP Detail

Summary

• ID
  rs29973612
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36787096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTCCAG GTATCGCTGG
  CTGATGCTCC TGCCTGGGCG GCTGCGCTCT GCTCTCCCCC CTTCTGGATG GATGACTCAG
  TGCTTTCTTT CTTCCCCTCT CTCCACTTTG GGTTTTCTTG TGCTCTGGGG CTTCCTTGGC
  GGGATATTTG GACGGGTAGG CGGGGAACCT GATCCTGCCT TCACTCAACT ACACCCTGCC
  K
  GGGAGGGAAA TAGAGAATGG GAGGGACGAG AGAGGGCAGA GAGAAGAAGC AGGCTGTGCG
  AGGGAGGAGG GGAGTGCTTT GCCCCCGAAA TCTGATTGGG AAGCTTATGA AAAGCAGGCT
  ACTCTGGGGG CAGTCTTTCC CCAAACGGAT CTGTGTAGAA AGACCATGGG TTATAAGACC
  GTTTGTTCTT AGCACCCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45882258	mCV22310720	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss133122064	ENSMUSSNP4962411	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29973612					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36787096 () rs orientation: forward

Symbol	Name	Function Class
Gm53282	predicted gene, 53282	1461 bp downstream
Ptn	pleiotrophin	within coordinates
Rr146140	regulatory region 146140	within coordinates
Tssr60337	transcription start site region 60337	187 bp upstream
Tssr60338	transcription start site region 60338	161 bp upstream
Tssr60339	transcription start site region 60339	137 bp upstream
Tssr60340	transcription start site region 60340	104 bp upstream
Tssr60341	transcription start site region 60341	70 bp upstream
Tssr60342	transcription start site region 60342	35 bp upstream
Tssr60343	transcription start site region 60343	14 bp upstream
Tssr60344	transcription start site region 60344	within coordinates