rs29973759 SNP Detail

Summary

• ID
  rs29973759
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36788267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTAAAA TTACAGCCAT
  TGGTTATGGC AAGTGGTTTT AAGGACTAGG AGTCTTCTAT TGGCTGTTAC CTGTACCAAT
  GTCCAAGAGT AATCGAGGGA CAAAGGTGAC CCTGCAGGAG TAGAGCTTTT AGTCCACTAA
  TCTTCGTTTC TGCCCCTCCC CCCACCCCGC CCTCCAACGA AAAAATGGAC AGAAATTCAC
  D
  TTTACACCTG ATCTGTATTC TTTACAGTCT CTTCTGCTAA ACCACCTTTC CACACACAAA
  TTGCACATGC CTTCCTCAAG ACCAACTCCC AGGCTATGCA CATCCCTGTT TGAAAGTTCA
  TCTTTGCCAT GAAACAGTCC ATGTGAGTGT TCATCTGGTG TCACCTGTGT ACATCATGAA
  CTACTCATAA GCTTTCTTTA                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45881078	mCV22310722	ABI	CRAMUS_MOUSE	f	SNP	G		A					A		A
ss51286111	NES13784044	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A		T	A	A	A	T	A	A	T	T
ss133122067	ENSMUSSNP3013720	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29973759					SNP	G	G	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286111	NES13784044	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36788267 () rs orientation: forward

Symbol	Name	Function Class
Ptn	pleiotrophin	1153 bp upstream
Rr135017	regulatory region 135017	1534 bp proximal
Rr146140	regulatory region 146140	466 bp distal
Tssr60337	transcription start site region 60337	1358 bp upstream
Tssr60338	transcription start site region 60338	1332 bp upstream
Tssr60339	transcription start site region 60339	1308 bp upstream
Tssr60340	transcription start site region 60340	1275 bp upstream
Tssr60341	transcription start site region 60341	1241 bp upstream
Tssr60342	transcription start site region 60342	1206 bp upstream
Tssr60343	transcription start site region 60343	1185 bp upstream
Tssr60344	transcription start site region 60344	1145 bp upstream