rs29973826 SNP Detail

Summary

• ID
  rs29973826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20810521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG AATTCACAAA TAGCTGGGGC
  Y
  ATAATTGTGT GCCAACAAGC TTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46359597	mCV27566158	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136224741	ENSMUSSNP2904223	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss322873594	CHEV_9_20703669	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29973826					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20810521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	448 bp distal
Eif3g	eukaryotic translation initiation factor 3, subunit G	635 bp upstream
Rr674623	regulatory region 674623	112 bp distal
Rr674624	regulatory region 674624	529 bp distal
Rr674625	regulatory region 674625	893 bp proximal
Tssr2789	transcription start site region 2789	650 bp upstream
Tssr2790	transcription start site region 2790	639 bp upstream
Tssr83934	transcription start site region 83934	1310 bp downstream
Tssr88340	transcription start site region 88340	594 bp upstream