rs29974076 SNP Detail

Summary

• ID
  rs29974076
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72573743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG ACCTAGAAGA CTGGTAGAAA
  K
  AAAGAAGCAA TTGTCTTCTG ACCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45883121	mCV22785774	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss321822390	CHEV_6_72546754	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29974076					SNP	T	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72573743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17548	CpG island 17548	1364 bp proximal
Elmod3	ELMO/CED-12 domain containing 3	Intron
Retsat	retinol saturase (all trans retinol 13,14 reductase)	1842 bp upstream
Rr399707	regulatory region 399707	1569 bp upstream
Rr632239	regulatory region 632239	within coordinates
Rr632240	regulatory region 632240	1572 bp proximal
Tssr57150	transcription start site region 57150	1834 bp upstream
Tssr61470	transcription start site region 61470	1570 bp downstream
Tssr61471	transcription start site region 61471	1621 bp downstream