rs29974480 SNP Detail

Summary

• ID
  rs29974480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45865332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGGACA AAGCTACACA
  GGACAGTGGG CGTTTAAAAG TGAAGAAATC ACAACTGCAG ACAACTAGTT ACTAGGTTGC
  TGAAACCAAA TCTAGGGGTA ACGTTTCCCT GAGGGGTAGG TGCCACTTCC GGGATGATCC
  TGGAAATGGT ACTCAAAAGG GGAGATCAGA CTTCAAGGAA ATGGATCCTG ATGGTTGATC
  R
  TGGCCTGCCA GAAACCAAAC TCCTCTCCCT CCCAAAGAAA GCCTCAGGTG CCTCCTCCTC
  AACTCCAGTG CTTCCGAGTC AATCCAGATC GGGCCTTGGA GAATGAGCAA GAGAGCTAGG
  CAGGCCACAC AGCCAGGCAG CAAGAATCTC CCAGGCTGTG CTCTGCCTGG GCCCAGCTCT
  GCCAGCCTTC TTTCTACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46359334	mCV25173040	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136420930	ENSMUSSNP4655011	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29974480					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45865332 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	67 bp upstream
Cpgi21698	CpG island 21698	399 bp proximal
Rr678012	regulatory region 678012	within coordinates
Rr678013	regulatory region 678013	933 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1293 bp upstream
Tssr89292	transcription start site region 89292	1150 bp upstream
Tssr89293	transcription start site region 89293	350 bp upstream
Tssr89294	transcription start site region 89294	932 bp downstream
Tssr89295	transcription start site region 89295	1136 bp downstream
Tssr89296	transcription start site region 89296	1162 bp downstream
Tssr89297	transcription start site region 89297	1192 bp downstream
Tssr89298	transcription start site region 89298	1219 bp downstream
Tssr89299	transcription start site region 89299	1245 bp downstream