rs29975303 SNP Detail

Summary

• ID
  rs29975303
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135395847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGCAAGA GGTTCCATCT
  CTAGAAAGCG CAATATTAAA ATCAGGGGGA AAAAAACCCA CTTCAGCAAG GACCTTACTT
  TAATCAAGTT TCTCTTTTTA AGGTCTGACG AACATTAATG CATTTTTTTT TTGCCACCCA
  AGAACAATCA GCTGAAGAGT CCTCTAGAAA GCCACCCAAC TCTATCACCA TCTCCATCTT
  K
  AGTACTAACC ACCAGTCTGA GCCCCAGTAT TTGATGCCAT AGCCATCAAA TGTTAATAAA
  CACCACAAGT TGTTCTCAGC CCTAAAACAA CAAAAATTTT AGTTAAATAT GCTTACTTAG
  AAAGCTGCAG TGTTGGCCTT TACTTTTAAA AGTTCATTAA AAAAACAAAA CAGATTAAAT
  CTAGATGATG AAATCTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45383696	mCV25339222	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss135928536	ENSMUSSNP4536700	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29975303					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135395847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	568 bp proximal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	51 bp upstream
Rr585766	regulatory region 585766	1260 bp distal
Rr585767	regulatory region 585767	1450 bp proximal
Tssr31841	transcription start site region 31841	955 bp downstream
Tssr31842	transcription start site region 31842	936 bp downstream
Tssr31843	transcription start site region 31843	918 bp downstream
Tssr31844	transcription start site region 31844	883 bp downstream
Tssr31845	transcription start site region 31845	843 bp downstream
Tssr35823	transcription start site region 35823	818 bp upstream
Tssr35824	transcription start site region 35824	304 bp upstream
Tssr35825	transcription start site region 35825	1053 bp downstream
Tssr35826	transcription start site region 35826	1179 bp downstream
Tssr35827	transcription start site region 35827	1188 bp downstream
Tssr35828	transcription start site region 35828	1239 bp downstream
Tssr35829	transcription start site region 35829	1299 bp downstream
Tssr35830	transcription start site region 35830	1325 bp downstream
Tssr35831	transcription start site region 35831	1334 bp downstream
Tssr35832	transcription start site region 35832	1402 bp downstream
Tssr35833	transcription start site region 35833	1426 bp downstream
Tssr35834	transcription start site region 35834	1853 bp downstream