rs29976080 SNP Detail

Summary

• ID
  rs29976080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81490939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCTTTGT CACCCTGGAC
  TGGGTGGGGC AGTCTGAACT CCAGGATTCT TCTCAGCCCC ACAGCCAGGG GAGAAGTTGC
  CTTTGACACA TGGAGTGTCA GCTGCTTGTG TAGATGCTGG ATGTTCCTCA AAGCACCTTA
  TGCCAAAAAT ACGAGCTTTG GGAGAAGTGG GACTCCATCG TCTCTAGGGA GTAGTGAATC
  Y
  CATAATCCTC TGCTGTGACC TATGAGCTAT TTGTCATGAC CGTGCAATCT TTTCGAAGGC
  TCGTCCTGAA CAATGCAATT CTAGCTAGCC ATACCTCTGT GGCTGTCACT CCACATAGCT
  GCTACAACCA GCCCAGCTGA CACCCTGTCT GCCTCTACTA TCTCTGGACT CTCCTTAGAC
  ACCAAGGCTC AGGTCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39635536	mCV23333849	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss63200483	NES17463085	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	C	C	C
ss147604567	ENSMUSSNP916084	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29976080					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200483	NES17463085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81490939 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	766 bp proximal
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	789 bp proximal
Gm30288	predicted gene, 30288	within coordinates
Rr347597	regulatory region 347597	1539 bp distal
Rr393975	regulatory region 393975	1922 bp downstream