rs29977025 SNP Detail

Summary

• ID
  rs29977025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95942138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC GCCCACATCC ATTTATCCCA
  Y
  GAGAAGGAAG CGCAGACTGA GGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39138284	mCV24950495	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		T
ss51136731	NES14338324	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C		C	T	C	C		C	C	T	C		T
ss144996081	ENSMUSSNP1773329	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss324490133	CHEV_13_96575585	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29977025					SNP	T	T	C	T	T	C	C	C	T	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51136731	NES14338324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95942138 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	538 bp distal
Rr285448	regulatory region 285448	within coordinates