rs29978443 SNP Detail

Summary

• ID
  rs29978443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63285306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTG CTAGGACTGG CTGACTTCCA
  Y
  CTCTTCAGGT AGTGGTAAAG GAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46359945	mCV25256641	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		T
ss52026089	NES15043505	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C		C	T	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29978443					SNP	T	T	C	T	T	C	T	C	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52026089	NES15043505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63285306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	within coordinates
Map2k5	mitogen-activated protein kinase kinase 5	122 bp upstream
Rr401444	regulatory region 401444	within coordinates
Rr680973	regulatory region 680973	within coordinates
Tssr90089	transcription start site region 90089	258 bp upstream
Tssr90090	transcription start site region 90090	195 bp upstream
Tssr90091	transcription start site region 90091	110 bp upstream
Tssr90092	transcription start site region 90092	44 bp upstream