rs29978551 SNP Detail

Summary

• ID
  rs29978551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37912250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCAAATA CAAAATGTAA TTGTTTACTA AAATAACAGA
  AGGGGTTTTC ATTTTAGGGC ACCAGGAAGC TGTTGCTCAG AAAATATGCT ATATATGTCT
  Y
  TAGAAAATTA TTTTTACACT CATCTATACT CAGTCTAGAG CTAATGTCAA AACAAAAATA
  GTAATTCAGA AGAATAGTGC AAGTTTCTTC TGCAAAGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45383835	mCV23189834	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss134816097	ENSMUSSNP6566495	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss320713495	CHEV_3_37757023	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29978551					SNP	T	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37912250 () rs orientation: forward

Symbol	Name	Function Class
Rr575577	regulatory region 575577	1817 bp proximal