rs29979022 SNP Detail

Summary

• ID
  rs29979022
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83172002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTT GAACTTCGGG CTGCAGCCCT
  K
  CGTGCAGAGA TCACAGATGC TGAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45883424	mCV23933596	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		G
ss60903741	NES15949735	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	G		G		T	G		G	T	T	G		T
ss133346950	ENSMUSSNP6096955	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							G
ss321844055	CHEV_6_83145014	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29979022					SNP	G	G	T	T	T	T	G	G	G	G	T	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903741	NES15949735	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83172002 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	789 bp upstream
Tssr57330	transcription start site region 57330	818 bp upstream
Tssr57331	transcription start site region 57331	856 bp upstream
Tssr57332	transcription start site region 57332	903 bp upstream
Tssr57333	transcription start site region 57333	940 bp upstream
Tssr57334	transcription start site region 57334	979 bp upstream
Tssr57335	transcription start site region 57335	1005 bp upstream