rs29979499 SNP Detail

Summary

• ID
  rs29979499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45925904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTGAAA GTTCCTTTCC
  TTGCCTCTCT CTGTCAAAGA CTACAAGGGG CCCTTCTTCC GAGGGTGGCG GCGGGCAGAG
  TGATTGGTCA GTTTCACTTC CTCTGGTGGG ACCCCTTCAA GCCTCAAGTC TTCAGAGCCC
  TGTGACAGAC TCAAGTGCGC CCTCCTGTTG CAGTCCCTCC CTCAGGTCCG CAGCTGGAGC
  Y
  GAAGCCGGCA TCTCCTTACC CCCTACAGTG TGTTTACTGT TGGCCTAGTC AAACTTGTGT
  TTACAAACAG AATGCCTCTG TCCCTTGTTT TCTCTCCCCT GTCTGCTTCT GTGGTTATTT
  TGCTCTGACC TCTGGGAAAT GGACTCCACA AACATAATTG GTTGTCTGGC TACGTTCTCT
  ATGATTTAAA GAAATTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46361000	mCV24050252	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136421747	ENSMUSSNP7053218	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29979499					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45925904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	1001 bp distal
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	1916 bp upstream
Rr401349	regulatory region 401349	1803 bp downstream
Rr678027	regulatory region 678027	1776 bp distal
Rr678028	regulatory region 678028	1826 bp distal
Rr678029	regulatory region 678029	26 bp distal
Rr678030	regulatory region 678030	1806 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84822	transcription start site region 84822	1785 bp downstream
Tssr84823	transcription start site region 84823	1746 bp downstream
Tssr89308	transcription start site region 89308	1913 bp upstream