rs29980165 SNP Detail

Summary

• ID
  rs29980165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33189470 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTAG ATCAGCCTGG GGTATCTCAG
  R
  GAATAACAAC CTCATTTTCT AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46361186	mCV24290846	ABI	CRAMUS_MOUSE	f	SNP		G	G				A
ss50968115	NES14414743	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	C		C	T	T	T	C	T	C	C	C
ss137582637	ENSMUSSNP4178049	ENSEMBL	ENSEMBL_Sanger	r	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29980165					SNP	G	G	G	G	G	G	A	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968115	NES14414743	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33189470 () rs orientation: reverse

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	within coordinates
Rr256081	regulatory region 256081	731 bp proximal
Rr260246	regulatory region 260246	within coordinates