rs29980748 SNP Detail

Summary

• ID
  rs29980748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66591641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTC ACCGGAGAAG TCCCGATAAA
  R
  TGCGAGAGCC GGTCTGGGGC GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39635587	mCV23204004	ABI	CRAMUS_MOUSE	f	SNP		A					A		G
ss50450330	NES13440894	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G		A	G	A	A		A	A	A	A		A
ss147332529	ENSMUSSNP3787478	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss325661078	CHEV_18_66618224	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29980748					SNP	G	A	A	A	G	G	A	A	G	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450330	NES13440894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66591641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	within coordinates
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	34 bp upstream
Rr405709	regulatory region 405709	within coordinates
Rr539737	regulatory region 539737	within coordinates
Rr539738	regulatory region 539738	158 bp distal
Rr539739	regulatory region 539739	104 bp distal
Rr539740	regulatory region 539740	34 bp proximal
Tssr151705	transcription start site region 151705	17 bp upstream