rs29980934 SNP Detail

Summary

• ID
  rs29980934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13821699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTCTT AAAACTCCAC
  TGACCAGAGC TGCTCTTCAT TGGATTTTTG TTTTATAAAA ATGAGTTAAT TCATTTTTAT
  TTTAAATGTA TTATTTTATG AGGCAGGGAT GAATTCAAAA GTAGAAATTC TCATGGTAAT
  CCCCTAAAAC ACTAAACCAT ATTGTCCTTC TCCTTTAATA TGGGCTGCAC AAACTCCAGT
  R
  CCCACCATGT GGTCTGGACA ACATCTTCTT TGTCAATTAG ATTTTAGATT CACACAGTTT
  CACATTTTGA AATTAAAAAG GTCATTGGCA GAACAAAAAA GTAAACTATT GGCGGGCATG
  GTGCACGCCT TTAATCCCAG CACTCGGGAG GCAGAGGCAG GCGGATTTCT GAGTTCGAGG
  CCAGCCTGAT CTACAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47401724	NES11503384	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	G	A		A
ss322509743	CHEV_8_13771699	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29980934					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47401724	NES11503384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13821699 () rs orientation: forward

Symbol	Name	Function Class
Cdc16	CDC16 cell division cycle 16	within coordinates
Gm46032	predicted gene, 46032	within coordinates
Tssr76425	transcription start site region 76425	310 bp downstream