rs29981287 SNP Detail

Summary

• ID
  rs29981287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTAGACTTTA GGTAGTAAAT CTTTTTTTTT AAGATTTATT TATTATATGT AAATACACTG
  TTGATGTCTT CAGACACACC AGAAGGGGCA TCAGATCTCA TTACAGATGG CTGTGAGCCA
  CCATGTGGTT ACTGGGAATT GAACTAAGGG CCTTTGGAAG AGCAGTCGGT GCTCTTAACC
  ACTGAGCCAT CTCTCCAGCC CAGGTAGTAA ATCTTGTACT AAAATGAAGC AGGGTCTTTG
  CACAAAGAAG TTTGATCAAA AGAAAAACTG TGTAAGGGAT AAGAACAAAG TAAGAAACAT
  Y
  TAAGTAACAT GTATATGTAT TTCTAAGACT TTAGTAGTCT TTATGGAGTC TAATGGAGCA
  TTATCAATTT GAAATGGTAT TGAATTAGAC CTGTAAAGAT TGTCCCCCAA AGCTCGGAAA
  GGGGAGTTTG GTTTGTGAAA TTTTGTAGAG ATTCTTTTTT TTTTTTTTTT TTTTTAAGGT
  GGAGTCTCAC TAGCTCTGGC TGGCTTGGAA CTTTTAACTA TGGTGTAGAC CAGGCTGGCC
  TCAACTCCAT GACCCACTTG CCACTGCCTT TGAAGGGCTG AGATTAAACC ATCAAGTTAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39636188	mCV23294419	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29981287					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	1130 bp distal
Rr393530	regulatory region 393530	1378 bp downstream
Rr535948	regulatory region 535948	837 bp distal
Tssr150556	transcription start site region 150556	1952 bp downstream
Tssr150557	transcription start site region 150557	1913 bp downstream
Tssr150558	transcription start site region 150558	1882 bp downstream
Tssr150559	transcription start site region 150559	1669 bp downstream
Tssr150560	transcription start site region 150560	1492 bp downstream
Tssr150561	transcription start site region 150561	1458 bp downstream
Tssr150562	transcription start site region 150562	178 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates