rs29981503 SNP Detail

Summary

• ID
  rs29981503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50968776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGTTT TTCCTGTGTC
  TTAGTAATAT ATTTCATTTT CTACCCATCC ACTCTCCTTG CTCCTCCCCA TTCGGTCCGG
  GGAGAATTCA TAGATGTCAT TGGTCACAAA TCCACTCTCC ATACTTGCCA AAGTCACAAA
  CCCACTTTCC GAAGGGTTCA CAGCAATGTT TTCATAGTCA CAAGACATGT CATCAGGCAT
  R
  GCTTCCCCAG AACACACCCG GAAGGAGATG TTCTTCAGGT CTGGCCGGGG CTCAGCTAAA
  TCAGCTTCAC TTTGTTTTCT GATGACATTG TAAACATCTA GGTTGGGGCT GTTTTCTTGG
  CGAGGAGTGG GCCAAATGGT GTGCTGCTCC TTTGTGCTAG GGTCTGTCTG TTCTCGTTTT
  CTAAAAGAAG AGAACCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46361505	mCV24072359	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss136485312	ENSMUSSNP3953161	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29981503					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50968776 () rs orientation: forward

Symbol	Name	Function Class
Gm32681	predicted gene, 32681	within coordinates
Layn	layilin	within coordinates
Tssr89523	transcription start site region 89523	1016 bp upstream
Tssr89524	transcription start site region 89524	773 bp upstream
Tssr89525	transcription start site region 89525	480 bp upstream
Tssr89526	transcription start site region 89526	447 bp upstream
Tssr89527	transcription start site region 89527	391 bp upstream