rs29982050 SNP Detail

Summary

• ID
  rs29982050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13723379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTTGGC CCACGTGGCA
  TCTTCTTGAA GCAGACCCAG AAACTACTAT ACACAAAGGC CGTGGTCACA ACTCACAAAA
  CACCTCTTCT CTTGGAACCC AGCATGGGCC AGCCATGACG ACTGTATTAG CCCCATGAAG
  CACACCCGCC CCCTGCAGGT CCATGGCCTG CTGTGACCCA CAGCAGCCCT GGTGTCAATA
  Y
  ACTGTGGCCA GTGGAGATGG TGACTCTGCT CAGTGGGCTA ACTGGAGCCC TGAGCTTCCA
  GCCCTTAATC TGGGGCTTTG GCACCTGCTG CCTCCTCACG GCTGACCAGC AGGGCATGCC
  CCTGTTGTTG CCATCTTTCA CTTCTGTACA GCCTCATTTC ACTGGCTCCT CCTGCTTCTG
  GTGAGATTCT GTTGTCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47400490	NES11509510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29982050					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47400490	NES11509510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13723379 () rs orientation: forward

Symbol	Name	Function Class
4930442M18Rik	RIKEN cDNA 4930442M18 gene	within coordinates
Rasa3	RAS p21 protein activator 3	within coordinates
Rr400766	regulatory region 400766	1267 bp upstream
Rr659980	regulatory region 659980	1407 bp distal
Rr659981	regulatory region 659981	372 bp distal
Rr659982	regulatory region 659982	37 bp distal
Rr659983	regulatory region 659983	1430 bp proximal
Tssr76418	transcription start site region 76418	1110 bp upstream