rs29982412 SNP Detail

Summary

• ID
  rs29982412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13819521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAACCTA GAAGCTGAAG
  AATAAGTCCA TTACTTGAAT ACTGCTTTTG TTTCAGCAAA GCTACCACGT TGGAGAAGAC
  CTACGGTCCT GCCTGGATAG CCTACGGGCA TTCCTTCGCT GTGGAGAGTG AGCACGACCA
  AGCAATGGCT GCTTACTTCA CAGCAGCACA GCTGATGAAG GGGTAGGCAC ACGGCAGGAC
  Y
  GCATGCCAGG AAGGGCTTCT CTTGCCGAGA GGAGGGCGTT TCTCTTAGGA ATGCTGTTAC
  GGTTTGGGTC CTGAGTTAGA ACTGTCACAC GTGTGTTAGG TTAACAGTCT GTATTTATAA
  CATGACTGGC AACGGAGGGG GCAAGGTTGA TGTGATTCTC TTCCAGCCAG CTCGAGAGAA
  AAGGGAATGA GACCAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47401652	NES11503550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	C	T		T
ss322509712	CHEV_8_13769521	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29982412					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47401652	NES11503550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13819521 () rs orientation: forward

Symbol	Name	Function Class
Cdc16	CDC16 cell division cycle 16	within coordinates
Gm46032	predicted gene, 46032	within coordinates
Tssr76425	transcription start site region 76425	1845 bp upstream