rs29982986 SNP Detail

Summary

• ID
  rs29982986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13724007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCACTGA CAGACAGCAC
  TGAGGGAGAG TACTGAGCGA GAGCACCAGG GAAGAACACC TAGGGAGAAC ACCAAGAAAG
  AGCACCGGCA GAGAGCACTG TAGGCAGGAA ACTAGCCCTG GTCCACAGCA ACCCAACCCT
  GCTCAGTGAG AGGAGCTACC ATTTTTATGC CCTGCTTGCC CCTGTACTTC TCCACAGCCA
  Y
  ACTTTAGAGC CAGAACATGG AGCCTCGGTG AGGATGCAGA ATGGCTGCTA GGCTATTCAG
  GCAGAAAGAT CGGAGTCACC CAAGGGTCCA GGGGAGAGCA GAATGCAGAG CCTGGCTTCC
  TGGGGGCTTA GGGAGCTCAG TAGAGACCTT GACGGAAAGA AACTGAGCAA GGCCGTTTGT
  GACAGCACAA GAGAGCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47400496	NES11509512	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C		C
ss322508968	CHEV_8_13674007	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29982986					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47400496	NES11509512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13724007 () rs orientation: forward

Symbol	Name	Function Class
4930442M18Rik	RIKEN cDNA 4930442M18 gene	within coordinates
Rasa3	RAS p21 protein activator 3	within coordinates
Rr400766	regulatory region 400766	639 bp upstream
Rr659981	regulatory region 659981	1000 bp distal
Rr659982	regulatory region 659982	665 bp distal
Rr659983	regulatory region 659983	802 bp proximal
Tssr76418	transcription start site region 76418	482 bp upstream