rs29983865 SNP Detail

Summary

• ID
  rs29983865
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13725131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTTCTC TGGGTGGGGG
  AAGAGTGATG ACTAGGACAG ATGACAGTCT TGTGTATTCC CTCCGGATGC AGCCACCCCT
  TTGGACTCTT GCTTTATTCA GATGGGGAAA TGGATGTGAC AAGAAAGAGG TTCATCTAGG
  TCAGCCTGGA AGTCACCAGA AGGCTTGCTG GAAGCCATCA TGCCTGGAGA CAAGGCTCAA
  W
  GGAGTGACTC TGGTGATGTG TGTGTGTGTG TGTGTGTGTG AGAGAGAGAG AGACAGACAG
  ACAGACAGAC AGAGACAAAA ACTGAGAAGG AAAATCAGGG TCAGAAAGGG TGAATACTTC
  TGCCCTCAAG TCAACTAGTG TCACGACTAG TGACACTTCG GGCAGATGTA AATCATTGAG
  TGATATGACC ACAAACCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47400505	NES11509515	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	T		A
ss322508970	CHEV_8_13675131	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29983865					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47400505	NES11509515	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13725131 () rs orientation: forward

Symbol	Name	Function Class
4930442M18Rik	RIKEN cDNA 4930442M18 gene	within coordinates
Cpgi20115	CpG island 20115	1177 bp proximal
Cpgi20116	CpG island 20116	1665 bp proximal
Rasa3	RAS p21 protein activator 3	Intron
Rr400766	regulatory region 400766	185 bp downstream
Rr659982	regulatory region 659982	1789 bp distal
Rr659983	regulatory region 659983	301 bp distal
Rr659984	regulatory region 659984	1907 bp proximal
Tssr76418	transcription start site region 76418	605 bp downstream
Tssr80459	transcription start site region 80459	1235 bp downstream