rs29986041 SNP Detail

Summary

• ID
  rs29986041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42240561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTTAAA TTTTAATAAA
  TCCATTTTTT CCAATAAATA TATACTGAAT GTGTATTATG TGTCAAATAG TGTTCCAGTC
  TCTAATATAA GTTGTAAAAG CATGATAGGA GGAACGTAGC ACCACCCGTG TACTTGTATT
  TTTTAAAGAA AATTGATCAA ATATGTGCTA CCATCCATTG GAGTCATGTG CTGGCTCTGC
  M
  AATCCCACGT GAGGCTTGGA AAGAATACAC AGACTGGGTA TCTTGGCTGT CTGTTACATT
  CACAATGCTC CAGGAAGCAG ATTTATTGCC TTCTTTCCAA AAGGTGGTGT GAAGGAAACC
  ATAGAGAAAC AGACTTTGCC AGCCACTAGT GTTTGGCAAG CAGAGCCAGA GCTTAGAGAA
  CTTTAGATGG AAATCTACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46903455	NES10946637	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29986041					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46903455	NES10946637	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42240561 () rs orientation: forward

Symbol	Name	Function Class
Tenm1	teneurin transmembrane protein 1	within coordinates
Tssr163247	transcription start site region 163247	1064 bp downstream