rs29986712 SNP Detail

Summary

• ID
  rs29986712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86348442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TAAAGTTTAT CATGTTGCTA
  Y
  ATAAATTCCT GTTTCATTCC AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46362817	mCV23664562	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss136756093	ENSMUSSNP1265282	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	T
ss323056344	CHEV_9_86359996	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29986712					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86348442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	1272 bp distal
Cpgi22102	CpG island 22102	528 bp proximal
Dop1a	DOP1 leucine zipper like protein A	752 bp upstream
Rr684095	regulatory region 684095	1450 bp distal
Rr684096	regulatory region 684096	949 bp distal
Rr684097	regulatory region 684097	1410 bp distal
Rr684098	regulatory region 684098	275 bp proximal
Rr684099	regulatory region 684099	692 bp proximal
Rr684100	regulatory region 684100	776 bp proximal
Tssr2956	transcription start site region 2956	1570 bp upstream
Tssr86391	transcription start site region 86391	774 bp upstream
Tssr86392	transcription start site region 86392	784 bp upstream
Tssr86393	transcription start site region 86393	835 bp upstream
Tssr90780	transcription start site region 90780	1446 bp upstream
Tssr90781	transcription start site region 90781	1431 bp upstream
Ube3d	ubiquitin protein ligase E3D	1439 bp upstream