rs29987270 SNP Detail

Summary

• ID
  rs29987270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13821295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAGCTTA TTTAAAGTAT
  TGTCTTTTAA GTCCAGTATC TCCTCTTCTG CTAGGACGGT TTCTGTTGAC TGCTTTTTTT
  TTTTCCTGTT CGGACTGTAT TTAGAGTTAG AAAAAAGTGA ATGATAGGAT CTAAAGCTGA
  CAAATTTCTA TTGCATTACA AAGTTTCAAG CGTTGAATAT GTGAAATTTT CAAATCTTTT
  Y
  AGGTGTCACT TGCCAATGCT ATATATTGGA TTAGAATATG GTCTGACCAA TAACTCGAAA
  CTGGCTGAGC GGTTCTTTGG CCAAGCTCTG AGCATCGCCC CAGAAGACCC ATTTGTCATC
  CATGAGGTTG GAGTGGTTGC CTTTCAGAAT GGAGAGTAAG TACCTGAGGG CTTCCACCTG
  GTGTGGGCTC TTTGAAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47401712	NES11503380	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C	C	C	C	C		C	C	C	T		C
ss322509738	CHEV_8_13771295	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29987270					SNP	C	C	T	T	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47401712	NES11503380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13821295 () rs orientation: forward

Symbol	Name	Function Class
Cdc16	CDC16 cell division cycle 16	within coordinates
Gm46032	predicted gene, 46032	within coordinates
Tssr76425	transcription start site region 76425	71 bp upstream