rs29988947 SNP Detail

Summary

• ID
  rs29988947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:77183979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGTAAGT CTAGTTTTCA
  ATTACAAGGT GTGAAGACAT AAATAGTGCA GACAAAATAC AAGGAGTGTT TATAGCCTTG
  AGATTGAGTT ATATTGTATA ACCAAGTAAT AAAAGTAGTT AGAAATCAAT CATATGGGAG
  GACAAAGGTT GAAAACCACA GTGTGCCTCC TGGACACCTT CAGTAGCTCA GCTTGTTGGA
  Y
  GCAGAATGGG AAGTCGAGCT CTGGAACTTC AGGCTGTGGC AAGGCATCTC AGAGAGAACA
  CAGGGCCTGG AGTGCAGCCT AAAAATATCT TCTTTAGAAT TCCAGAGCAT GGACTTCCAG
  ACATCTACAT AAGGCAAGGT GAAGCTCGAT GCACTTAAAC AGTGCCTCTT CAAGGGGGAG
  GGGAAGACTG AAGGCTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46362638	mCV22299538	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136655332	ENSMUSSNP5420626	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss323012063	CHEV_9_77124504	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29988947					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77183979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53504	predicted gene, 53504			1693 bp upstream
Mlip	muscular LMNA-interacting protein			Intron
				Noncoding-Transcript-Variant
Rr683300	regulatory region 683300			7 bp proximal