rs29989300 SNP Detail

Summary

• ID
  rs29989300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:30369048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGTGGC TGGCTAGCCA
  GCTCAGGCAA ATTGGTGAGT TCCAGGTTCA GTGAGAGGCT GCCTGGAAAG ATAAGGTGGG
  GCGCGGCAGA GGAAGACACT AGATGGGTAC CAGTTCACGT ACACGAATAC ACGCATCTCT
  AAAAAGTGCT TTTTGTCACT GTTTTCGAGC ATCTGTGTTT GAAACAGAGG CCAAAGGATA
  R
  TGAACCCTTT TCAACACTTA CAAACCTAGA ATGAGCTATC AAGTTTTCGA CAGGAATAGC
  AGCATCCAAG CAGGGCCAGC AGCTGGGTGG TCCCGTTGGT GGTCGTTTTT GTAGCCTCTA
  GGTAGCTGGC TCCAGGTTAT GATGAGACCC ATAGCATCCC AGGAAGCCTT GGCTTTGGGC
  TCTGCCTGCT CTCTGTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ
ss49089058	NES12416366	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ
rs29989300					SNP	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089058	NES12416366	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30369048 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mboat1	membrane bound O-acyltransferase domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr476549	regulatory region 476549			1328 bp proximal