rs29989302 SNP Detail

Summary

• ID
  rs29989302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30368479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGAAA TCTTCCCGTG
  TAATTTAAAC TATAACCCAG TATGTGTGGG TTGTTTCTCT GAGAATTAAG AGGGATAATC
  TTATCTTACT CAGAACTGCT GAAGGAGACT TGGTATGTGA GAAGACAAAC GCTGGAGACT
  TGCAGAGTTT CATTCAAAAA ACAGTCATTG GCAAGGACTT TTAGCCCTGT AGTGTTACTT
  Y
  ACATCCTCTC TGGACAGCGC CCGTGTCTTG CCCGGTGATG AGGAGCCTCA GTTTAACTCA
  GAGTGCTACT AAAGATTTGA GTGTTTTAAG GAGTTGGTGG TTTCGTTTCC TTGGCAGTTA
  TTGGCAGTCT TTGAGATGAT TAGATGATAG GTGTGTGTCG CTTTGAATGA CAACTGACAG
  TTGTTGAGCC CCTGGCATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49089060	NES12416418	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29989302					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089060	NES12416418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30368479 () rs orientation: forward

Symbol	Name	Function Class
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates
Rr476549	regulatory region 476549	1897 bp proximal