rs29989438 SNP Detail

Summary

• ID
  rs29989438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30351758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCAGGTA GGCTCCAGGT
  TCTGGGCTCA AAGCCACAGC ACTTTGTTTA TGTTAAAACA GAGACAAAAC CAAGCAAGGT
  TCTCAGTAGC CAGCTCTCTG CAGACAACCA TGAAAATGCC CTAGGGCTAC ATGACACACT
  GCAATGCTGT TTTCAACAGA CTGTATTGCC CCTTCAGTTT CTCTTCAAGG AAAAATAAAA
  M
  AAGATTTGTT TTGAGAACCT AAGTTCCCGT CCTGTGCTTA GAAAGCAATG TATGTGCTAA
  AGGTGATTTG ATTTCTTGAA TGTTTTTCAT AATTATTTTT TTCATATTTG CTTATTTGTG
  TATGTGTGTG TTTGTGTGAT TGTGTTTGTG TGTGTGTTTG TGTGTGTGTA TGTGTGTGTT
  TGTGTGTTTG TGTGATTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49089155	NES12417103	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29989438					SNP	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089155	NES12417103	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30351758 () rs orientation: forward

Symbol	Name	Function Class
Gm40869	predicted gene, 40869	within coordinates
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates
Rr278813	regulatory region 278813	1153 bp proximal
Rr283042	regulatory region 283042	558 bp distal
Tssr119080	transcription start site region 119080	1404 bp downstream
Tssr119081	transcription start site region 119081	803 bp downstream
Tssr119082	transcription start site region 119082	772 bp downstream