rs29989439 SNP Detail

Summary

• ID
  rs29989439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30351707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCGCGTG TCCATTTTAT
  AGTTGGAGGT AATACATAGT GGGCGAGTAG CAGATCAGGT AGGCTCCAGG TTCTGGGCTC
  AAAGCCACAG CACTTTGTTT ATGTTAAAAC AGAGACAAAA CCAAGCAAGG TTCTCAGTAG
  CCAGCTCTCT GCAGACAACC ATGAAAATGC CCTAGGGCTA CATGACACAC TGCAATGCTG
  Y
  TTTCAACAGA CTGTATTGCC CCTTCAGTTT CTCTTCAAGG AAAAATAAAA CAAGATTTGT
  TTTGAGAACC TAAGTTCCCG TCCTGTGCTT AGAAAGCAAT GTATGTGCTA AAGGTGATTT
  GATTTCTTGA ATGTTTTTCA TAATTATTTT TTTCATATTT GCTTATTTGT GTATGTGTGT
  GTTTGTGTGA TTGTGTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49089156	NES12417102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29989439					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089156	NES12417102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30351707 () rs orientation: forward

Symbol	Name	Function Class
Gm40869	predicted gene, 40869	within coordinates
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates
Rr278813	regulatory region 278813	1204 bp proximal
Rr283042	regulatory region 283042	507 bp distal
Tssr119080	transcription start site region 119080	1353 bp downstream
Tssr119081	transcription start site region 119081	752 bp downstream
Tssr119082	transcription start site region 119082	721 bp downstream