rs29989440 SNP Detail

Summary

• ID
  rs29989440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30351633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTTATTT CCTCTGAATG TGGTAGGTCG
  CGTGTCCATT TTATAGTTGG AGGTAATACA TAGTGGGCGA GTAGCAGATC AGGTAGGCTC
  CAGGTTCTGG GCTCAAAGCC ACAGCACTTT GTTTATGTTA AAACAGAGAC AAAACCAAGC
  M
  AGGTTCTCAG TAGCCAGCTC TCTGCAGACA ACCATGAAAA TGCCCTAGGG CTACATGACA
  CACTGCAATG CTGTTTTCAA CAGACTGTAT TGCCCCTTCA GTTTCTCTTC AAGGAAAAAT
  AAAACAAGAT TTGTTTTGAG AACCTAAGTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49089157	NES12417101	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C		C	A	A	A		A
ss324308946	CHEV_13_30259519	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29989440					SNP	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089157	NES12417101	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30351633 () rs orientation: forward

Symbol	Name	Function Class
Gm40869	predicted gene, 40869	within coordinates
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates
Rr278813	regulatory region 278813	1278 bp proximal
Rr283042	regulatory region 283042	433 bp distal
Tssr119080	transcription start site region 119080	1279 bp downstream
Tssr119081	transcription start site region 119081	678 bp downstream
Tssr119082	transcription start site region 119082	647 bp downstream