rs29989872 SNP Detail

Summary

• ID
  rs29989872
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:84117112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGATCGCGAG GGCTTTGAAG ACACACATGA TCAAACGTGG TGAATCTGGA ACAAAAAGCA
  ACCCGTATTT CCTGAATCCC TTGCAGTCAT TTCCCAGCTT CTCTCATTTC TGTGAACTCT
  CATTTTATAT CCTTTCTCTA ATACCACCAT CTCAGGAGTA GCTCTGTCTC CTACTTATGC
  GTGCTGAAGG AAGTATCTGG TTTTGTAATC ACTGGTAAAT TTCACTTTCT CTTCTGTTGT
  ATTCCTACTG ACTTCTTTCC TTCCTTCTCT GGCCAGTGAT CCCATGAACC AGCGGGTAAC
  M
  AAATACTGAG GTACCAGTGT GGTTCTTTTA ATAAAGTCCA CTGTCAAATT CGCCCAAGGC
  AGGTAATTTA TGGGACCAAG TAATTTGTTT ACACTAAGGC TATGCCAAAA CCAAACAAAA
  CACAAAATAA AACTGCAGCC ACATACGAGA GCTTTTTGAG AGACCAGAAA TATTTATATT
  TAAAGGCTTC CTTTATTGTT TACAAAAGTA ATAAATTGGT AAAATTGGTA TGGGTTGTTT
  TTGGAGTTTT TGCAGAACTG TGTCTCAGTG TTATTACTAG TTGGGACAGT CACATGACTT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46363727	mCV22788397	ABI	CRAMUS_MOUSE	f	SNP		A					C		A
ss52030590	NES15049420	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29989872					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52030590	NES15049420	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:84117112 () rs orientation: forward

Symbol	Name	Function Class
Tssr86376	transcription start site region 86376	905 bp downstream