rs29989970 SNP Detail

Summary

• ID
  rs29989970
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30367328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGGAAG GCTTGCTGGG
  TGTGAGTCAG GTAGCTGTAT TTGTGCCTGA AAGGTCTTCC AAATGCCCAT GTATTGAGGT
  GTGTGGCTGG AGGAAGCTAA GTTGCTGGGG CATGCCCTTG GAGGAGATGT TGAGACCCCT
  GCCCCTTTCT TACTGTATTC TGGACCTTAT GAGGTGAGCA GGCCTCGCAC TCCATGCTCT
  K
  CCACGATGTT CTGTATCGTC TTGTGCCGGA AGCAGCAAAG CTCACTGTCC ATGGACTGAA
  CATGTGAGCC GAAGTATACC TTTCTTCTTT TTAAATGGTT TCTCCCAGCT ATGTATTATA
  GTCACAGAAA ACTCACTTCA CATAGGATGC TGGCTTCTAG TCCCAACTCT GAGACTCAGC
  AGCCCTGTCA CCCAGAATGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49089068	NES12416499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29989970					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089068	NES12416499	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30367328 () rs orientation: forward

Symbol	Name	Function Class
Gm11366	predicted gene 11366	1201 bp downstream
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates