rs29990521 SNP Detail

Summary

• ID
  rs29990521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46037493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTT GTTTTGTTAA
  ATATACTATC TGCATTGGTG TTTTGCCTGG ATGCCTGTGC ACACGTGGAT GTGATCCTTT
  GGAACTGGAG TTACATAGAC AGTTACAAGC TGCTCTGTGG GTGCTGGGAA TTCAACCTAG
  GTCCTACGGA AGAACAACCA GTGCTTGTAA CCCCTGAGCC ATCTTGCCAA CCCCAATGTA
  K
  TTTATTTTAG CTTAAGGTCA TTTTAAGGTA AAAATTGAAA CAGTCTAAAA TGTTTTTATG
  ATCATTGAAA GGATAATGTT CTGGGAACAT TGAGGTAAAT GTTGACTGTT GTTTCTGACT
  TCTGTTTTAA ATCGTGGCCT TATATAACAT GGGGGCTGCA GCTCAGTTGT GTCATCCTAG
  CATCCTCAGG GAGCTGCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46363035	mCV25177263	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss136423298	ENSMUSSNP2412326	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29990521					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46037493 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	155 bp proximal
Rr678057	regulatory region 678057	1224 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1038 bp upstream