rs29990615 SNP Detail

Summary

• ID
  rs29990615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30366896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGACAT TATACAAATG
  TGTATTATCC ATATGCACTG CACACACACA CACACACACA CACACACACA CACACACACA
  CACACCTGCT AGTAGTAGGG CTATTTTCCT ACATGTCTTC AACCTCCCTA CATTCAAGCT
  TATAACATCA TCCACAAATG TTCTACCTTC TCTCCCAGGC CTCTTCAGTG CCCTTACTCT
  Y
  TCCAGATGCT CAGAGTTCTT TGATAAGACC CTATTCTTAC ATGAGTCCAA ATATCAGTTG
  TTTTCAATTT TGTTTCTGGA GGAATTTTAA AAAGAATTTA ATTAAAATGT TTCTTTTCTA
  ACATTCTTTT GATTCTAGAG GTTAATTGAG AGCCTTTATC TTAGTGCGGT CTATTAGTCA
  GAGACATTTA CAGTTACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49089073	NES12416491	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29990615					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089073	NES12416491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30366896 () rs orientation: forward

Symbol	Name	Function Class
Gm11366	predicted gene 11366	769 bp downstream
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates