rs29991236 SNP Detail

Summary

• ID
  rs29991236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAAAAAAAA AAAATCCTTG GCCCGGGCGC AGGCTGATGG CATCAGCAAG TCAGGTCGCC
  GCGTGGAGGC CGTGCGCGCA TGCGCAGTGA CTTCCCCCGG CCACGGGCTC GCATGCGCTG
  GGGGTGTGCG CCGGCTTGGG GTCCCGATGC GTATGCGCGT TGGGTTTCTG TTGCAGGCAG
  CGCACATGCG CATTGCGTTT ACTTCCAAGT TGGCTGCACA TGCGTGTCGC AGAAGTGCGG
  GTCTGGCGAG TACAAAGAAG CCTGGCTTCG CGCATGCGTA TCGTGACGTA TGACAGCGAG
  Y
  ATGGCCTGGT GCCATCAGTC ATCCTGGAAG CTCCGCTCAC TTTTAAAAAA TAATCTCATT
  GGTGCCTAAT TGTCATTTAT TTACTTATCA TTTGCATATT CATGAATCTC GTTTACATAT
  TCTCAAGGTG CATTTGTTTA TCGCCCCCCA AGCTGGATTG GAAGATGACG TCACCCTGTT
  GTTACCCACC GAGTGACGCC TGGATGCTCC TCAGGCTCCG CCCCTTTTGG TCAGGAATTG
  ATGTCTTGAA ACATTGGCAT AGCATTTGCA TTTCATTTGA ATATTCATTA CCACATTTGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46363329	mCV24427014	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss134041037	ENSMUSSNP4903515	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29991236					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195187 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	225 bp upstream
Tssr3091	transcription start site region 3091	1532 bp downstream
Tssr3092	transcription start site region 3092	1504 bp downstream
Tssr3093	transcription start site region 3093	1484 bp downstream
Tssr3094	transcription start site region 3094	1432 bp upstream
Tssr3095	transcription start site region 3095	1231 bp upstream
Tssr3096	transcription start site region 3096	1151 bp upstream
Tssr3097	transcription start site region 3097	1075 bp upstream
Tssr3098	transcription start site region 3098	724 bp upstream
Tssr3099	transcription start site region 3099	621 bp upstream
Tssr3100	transcription start site region 3100	596 bp upstream
Tssr3101	transcription start site region 3101	484 bp upstream
Tssr3102	transcription start site region 3102	341 bp upstream
Tssr3103	transcription start site region 3103	299 bp upstream
Tssr3104	transcription start site region 3104	207 bp upstream
Tssr3105	transcription start site region 3105	97 bp upstream