rs29991917 SNP Detail

Summary

• ID
  rs29991917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGAAGTGAT CCCGGGGTCA CATGGTAGAG GCTGTAGCCC ACCATGAACT TGGCCCCGCC
  CACCTACACC ATGCCTCCGC CTCCCGGTTA ATTTGCATAT TCTAGAGTGG AGAAAGCACA
  GAGCATGGGG GGGGTGGTGG CGAGGGGGGT GGGAGAAGAG CATATGCAAA ACTTCAATGA
  ATATGCAAAT GATACGCGAT CCGTTCGCCG TTCGGAGGGC GGGGCCCTCA TTTGCATATT
  TATGAGAGGA ACCGAATGCT GTGGTGTAAT TATTGCTTCG GCCGGTCCGG TCCGAGCCGG
  K
  CCGGTCCGAG CCGAGGCCGC CCAGTCCGCT CGGAGCTGAA AACCGGAACC CGGTGGTGGT
  GGGGGAGGGG CGAGAGGAAG GGGGAGGGAT ATAGGCGACG GGGGCGGGGC GATAGGGCAG
  GGCCAACGCA ATAAATGGAC GAGGTGACGT CACCAACACG GGCGTGTCCC GGCTTCCGCT
  TCCGGTCAAT CACCCGGATT GGGGCGCCGT ATAGGGGCGC GACCACATTG ACATCACCGC
  TTTCTTCCTG CCAGGGTGGG CGTGGCCACC GTCCTCCGCT GTTTGTCAGT CATTAGCACT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46363940	mCV24427002	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss134041055	ENSMUSSNP6537790	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29991917					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194482 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	643 bp downstream
Gm20783	predicted gene, 20783	1961 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	930 bp upstream
Tssr3095	transcription start site region 3095	1936 bp upstream
Tssr3096	transcription start site region 3096	1856 bp upstream
Tssr3097	transcription start site region 3097	1780 bp upstream
Tssr3098	transcription start site region 3098	1429 bp upstream
Tssr3099	transcription start site region 3099	1326 bp upstream
Tssr3100	transcription start site region 3100	1301 bp upstream
Tssr3101	transcription start site region 3101	1189 bp upstream
Tssr3102	transcription start site region 3102	1046 bp upstream
Tssr3103	transcription start site region 3103	1004 bp upstream
Tssr3104	transcription start site region 3104	912 bp upstream
Tssr3105	transcription start site region 3105	802 bp upstream