rs29992326 SNP Detail

Summary

• ID
  rs29992326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45013222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAAAGT ATGTTGACAG
  CTTAAGCTAA TGTCCCAGTT GAAATCCCAG CAGTGGGAAA GATCCCACCC CGTGAAGACC
  AAGGATTACT GCCTATTTTC CCCTCCTGTG CTGGGGATTG AACCCTGTGT CTTGCACATT
  CTAGACAAGC TTTCTTCTAC CGAGTCACAG AACTGCTGCC TGAGTGGCTT TTCCCAGGGG
  Y
  GTGTACATTC TAAAGAAAGC AACTGTGCTT GCTAAGGTAC ACTCCCAGAG CTGTCTGATT
  TAGCTTTGAA CTTGCTTGGC CCCTCTAAGG GTCATCTCTC TAGTCATGAT GCATTTGAGC
  AAAAGATGAA GAGACTGTGT AGTTTCCACT CACAGTTTAT GTCTGTACCA TGGTCCTTGG
  TATTAAGGAA AGCCAGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46363155	mCV24046713	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss61388975	NES16766739	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	C	T	T	C	T
ss136405330	ENSMUSSNP1095056	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29992326					SNP	C	C	T	T	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388975	NES16766739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45013222 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	722 bp proximal
Tssr84725	transcription start site region 84725	950 bp upstream
Tssr84726	transcription start site region 84726	1912 bp upstream
Tssr84727	transcription start site region 84727	1942 bp upstream
Tssr84728	transcription start site region 84728	1970 bp upstream