rs29992525 SNP Detail

Summary

• ID
  rs29992525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44439053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA GGTCAGAGGA CAACTTGTGG
  R
  AGTTGTTTCT CTCCTACAAT GTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46363050	mCV24320736	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss136396666	ENSMUSSNP689087	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss322941050	CHEV_9_44335839	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29992525					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44439053 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1312 bp upstream
Rr200338	regulatory region 200338	347 bp proximal
Rr206318	regulatory region 206318	1852 bp distal
Rr401337	regulatory region 401337	965 bp downstream
Tssr89167	transcription start site region 89167	1784 bp upstream
Tssr89168	transcription start site region 89168	1333 bp upstream
Tssr89169	transcription start site region 89169	1316 bp upstream
Tssr89170	transcription start site region 89170	1255 bp upstream
Tssr89171	transcription start site region 89171	1241 bp upstream