rs29992975 SNP Detail

Summary

• ID
  rs29992975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57961100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGCCAT GCAAAGAGGG
  AACAAAGGCT TCAGCCTACA CGGGTCTTTG CTACATGACC AGACTCCCTT TCTCAAGGCC
  ACACGGTCTT CTCTGCTCCC CAAGGGAGCA GCTCTCCCAT GTTACAGACA ATCAGGGCTC
  AGGGACATGA AGTGACAGAA CTGGGCAGGC ACAGCAGGGA TCCCCTCTGT GCCAGTCTGG
  R
  GAGGGTGGCC TTGGCCTAGG CAGTCTGAGC TCCTGGCCTG AGCCTGAACT TCTTCAGCTA
  TGTGCCTCAG GTGAAGCCAG CTGGCCTTTC TCTCCGTGTG CAAATGGAGC CCTGTCAGGG
  GGAGTCACCC TGCCACCCCT AAGTGCAGTT TAACCAGGAC AAGGACAGCT AGTGACTTAA
  AGAGTCCTTG GGGTGAAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46363348	mCV23503854	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss322972692	CHEV_9_57901624	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29992975					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57961100 () rs orientation: forward

Symbol	Name	Function Class
Ccdc33	coiled-coil domain containing 33	within coordinates
Rr679845	regulatory region 679845	1555 bp distal
Rr679846	regulatory region 679846	1682 bp distal
Rr679847	regulatory region 679847	271 bp distal
Rr679848	regulatory region 679848	540 bp distal
Rr679849	regulatory region 679849	268 bp proximal
Rr679850	regulatory region 679850	1974 bp proximal