rs29993037 SNP Detail

Summary

• ID
  rs29993037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42518913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGACAG GTCAGCATTA
  AGAAAATCCT CAAGGAAGAG TGTATGTGTG TGTGTGTGTG TGTGTGTGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGACAT GCTCTTAATT TTACTGTGCT TGGCCACTCT
  AGCCCCAGGG TTCCCCAAAC AGCTCTGTCC CTTACCTAGA CGGGCAGGAG GGCACTAACC
  Y
  AGGCGAACCC TGTTCACTGC CCCAAGCCTA GGATCCCTCC CTTCCCACCC ACCTCAGCTT
  CCTCGAAAAA GCGGAGAAGT GGAATTTGTA CACCCAGAAA CTCGCTTGGG GAGCCTTAGG
  AGCCTGACTG GGCATGCTCG AGACTTTGGG GCGCCTCGAG TGGAGGCACT CTCCAACCGC
  TAACATCTGC ATGGCTGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46904629	NES10954205	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29993037					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904629	NES10954205	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42518913 () rs orientation: forward

Symbol	Name	Function Class
Rr8575	regulatory region 8575	within coordinates
Rr394981	regulatory region 394981	within coordinates
Tenm1	teneurin transmembrane protein 1	910 bp upstream
Tssr5616	transcription start site region 5616	1107 bp upstream
Tssr163248	transcription start site region 163248	1174 bp upstream
Tssr163249	transcription start site region 163249	1080 bp upstream
Tssr163250	transcription start site region 163250	1051 bp upstream
Tssr163251	transcription start site region 163251	1023 bp upstream
Tssr163252	transcription start site region 163252	986 bp upstream
Tssr163253	transcription start site region 163253	967 bp upstream