rs29993040 SNP Detail

Summary

• ID
  rs29993040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42519235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGACTGG GCATGCTCGA
  GACTTTGGGG CGCCTCGAGT GGAGGCACTC TCCAACCGCT AACATCTGCA TGGCTGGACC
  AGATGTGGCT GAAGTGGGGG AAGCTTCGGC GCCAGCTCCA AGGAGCCTTT ACTGTTCCGG
  GAAGGGCGCC GGCGACGCCC ATAGCTGCCT TCTTCGAGGC TTCCGAGCGA AAGCAGGACC
  R
  TGGGAGATAC CAAATGCTTA GCCAGGGGAG AGCATCAACT GGAAAAAGAA CAGGAGTCTT
  TGCAGACTCC TAAGCCCCTA CCCCTCCAGC TCCACCCGAG TAACATCGAG GTATTGGGCA
  CGCACAAAAG CACCAAGGAT AGCGAGCCGG TGTATGTGTT CCCTGGGACT CCCAGCCTCT
  AGCTAAAGAA ATGATCATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46904632	NES10954206	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29993040					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904632	NES10954206	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42519235 () rs orientation: forward

Symbol	Name	Function Class
Rr8575	regulatory region 8575	within coordinates
Rr394981	regulatory region 394981	within coordinates
Tenm1	teneurin transmembrane protein 1	1232 bp upstream
Tssr5616	transcription start site region 5616	1429 bp upstream
Tssr163248	transcription start site region 163248	1496 bp upstream
Tssr163249	transcription start site region 163249	1402 bp upstream
Tssr163250	transcription start site region 163250	1373 bp upstream
Tssr163251	transcription start site region 163251	1345 bp upstream
Tssr163252	transcription start site region 163252	1308 bp upstream
Tssr163253	transcription start site region 163253	1289 bp upstream