About   Help   FAQ
rs29993363 SNP Detail
Summary
  • ID
    rs29993363
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr13:12474972 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTATTTAAAA GGATTAAGAG
    GTATAGCCCA AGCCAGGCCC AGTGCCTCTC CCTTCCTGCG GCCTGGGAAT CCGGATGTAG
    AACTTTCAGC TGCTTCTCCA GCACCACGTC TGCCTGCATG CCACGTGCTT TCTAGTCATG
    GTGACAATGG ACTTGAACCT CTCAGACTAT AAGCAAGCCC CAGTTAAACG CGTTCCTTTT
    W
    AAGAGTTGCT ATGGTCATGG TGTCTCTTCA CAGCAGGAGA ATAGAGACTA AGGCATCCTG
    TCTCAAGATA ATGTTTAAGG GCTGAATAGA GAGCTTGCCT AGTGTGATGA GGCCCTGGGT
    TCTGTGCCAG CACTGCAAAA CCAAACAAAT CAAAAGCAGT AAATACAAAT AAAATACAAG
    CTAGGAAATA ACACAAAACC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
ss39139861 mCV22708331 ABI CRAMUS_MOUSE f SNP T T A A
ss148681925 ENSMUSSNP3559856 ENSEMBL ENSEMBL_Sanger f SNP T A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
rs29993363 SNP T T A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:12474972 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5278 CpG island 5278 868 bp proximal
Lgals8 lectin, galactose binding, soluble 8 within coordinates
Rr281011 regulatory region 281011 within coordinates
Rr369646 regulatory region 369646 492 bp upstream
Rr369647 regulatory region 369647 1058 bp upstream
Tssr118345 transcription start site region 118345 579 bp upstream
Tssr121451 transcription start site region 121451 965 bp upstream
Tssr121452 transcription start site region 121452 809 bp upstream
Tssr121453 transcription start site region 121453 1008 bp downstream
Tssr121454 transcription start site region 121454 1319 bp downstream
Tssr121455 transcription start site region 121455 1341 bp downstream
Tssr121456 transcription start site region 121456 1447 bp downstream
Tssr121457 transcription start site region 121457 1471 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory