rs29993769 SNP Detail

Summary

• ID
  rs29993769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50619964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAGGCC CTCACCACTC
  CTCCCCCTCA CGCAGGACTT CTCTTCACTC TGTGAGCCAG AGTAAACCCT TCTGTCTTTT
  AGCTGCTTCT GTCATGGAAA CGATGCAAGT TTACATCAAC ACAGCATCTA TTAAAGAAGT
  GCAGGTAGAA GAGCTTTTGA TCTTAATCCT TTTGTGCCTA CATTTCCTGC CAGTCCTCAG
  R
  TAAATCCTCT CTAAGTAAAG GAAAGAGGGC AGATGCTTAA GATGGACTTT GGGATTCTTT
  TTTTTTTTTA CTTTATTTTC AGTTATGTGC GTGTGAGTGT GTGAGTGTGA GTGTGTGTGT
  GAGTGTGAGT GTGTGAGTGT GTGTGTGTGA GTGTGTGTGT GAGTGTGTGT GTGAGTGTGT
  GTGAGTGTGT GTGTGTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46362970	mCV25205332	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss47707820	NES11324243	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G	G	G	G	G
ss136479814	ENSMUSSNP5258546	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29993769					SNP	?	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47707820	NES11324243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50619964 () rs orientation: forward

Symbol	Name	Function Class
Dixdc1	DIX domain containing 1	within coordinates
Gm39337	predicted gene, 39337	within coordinates
Gm51674	predicted gene, 51674	1994 bp downstream