rs29996337 SNP Detail

Summary

• ID
  rs29996337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63237431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACCAGGC TGGCCTTGAA
  CTCAGAAATC CACCTGCCTC TGCCTCCCGA GTGCTGGGAT TAAAGGCATG CGCCACCACT
  GCCCGTCGGC TTTCTTTCCC AGCGAGCTGA GAAGCACAGT GATGGATGGA TGAGCTCTGA
  GAACAGTACA TTGGGTTCTC AGGATATTGC TTTAGTACAA GATGAATCGC AAGGAGTCAA
  Y
  AATTCTGTTT TGGAAATGTT TCCATAAACA AGCCATCTTC AAAAAGACCT CCTTCATGTT
  ATAAATGATG TAAGGACTGC ACATCTGTCT ATCTCGCTGA AAGAGTCCTG TATGTTTGTT
  TGTAGATAGA ACCTCTCTGT AGAGCTCAAA CTTTTTCCAG CGTAGTCTCC CTAGCACTGC
  AATTATAGGC GTGAATGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47404437	NES11055506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29996337					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404437	NES11055506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63237431 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	1911 bp proximal
Gm56066	predicted gene, 56066	116 bp downstream
Platr12	pluripotency associated transcript 12	1956 bp upstream
Rr188	regulatory region 188	1351 bp proximal
Rr371405	regulatory region 371405	1704 bp upstream