rs29996340 SNP Detail

Summary

• ID
  rs29996340
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63237593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTGCTT TAGTACAAGA
  TGAATCGCAA GGAGTCAACA ATTCTGTTTT GGAAATGTTT CCATAAACAA GCCATCTTCA
  AAAAGACCTC CTTCATGTTA TAAATGATGT AAGGACTGCA CATCTGTCTA TCTCGCTGAA
  AGAGTCCTGT ATGTTTGTTT GTAGATAGAA CCTCTCTGTA GAGCTCAAAC TTTTTCCAGC
  K
  TAGTCTCCCT AGCACTGCAA TTATAGGCGT GAATGCCATA TACAGACCCA GGAACGGTGT
  GATTTACAAT ACATTCTTTC TCTTGCCTTT TTTTTTTTTT TTGCCTTTGC ATAACTTGAG
  TATTTTCAAC ACGTTGAACC CGTCAGTTGT CAGTCCCCCC CCCCCCCCGT CTTAACACAC
  TCATTGCATT TTTTTAACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404440	NES11055509	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29996340					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404440	NES11055509	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63237593 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	1749 bp proximal
Gm56066	predicted gene, 56066	278 bp downstream
Platr12	pluripotency associated transcript 12	1794 bp upstream
Rr188	regulatory region 188	1189 bp proximal
Rr34223	regulatory region 34223	1994 bp distal
Rr371405	regulatory region 371405	1542 bp upstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	1924 bp upstream