rs29996343 SNP Detail

Summary

• ID
  rs29996343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63237866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTTCTC TTGCCTTTTT
  TTTTTTTTTT GCCTTTGCAT AACTTGAGTA TTTTCAACAC GTTGAACCCG TCAGTTGTCA
  GTCCCCCCCC CCCCCCGTCT TAACACACTC ATTGCATTTT TTTAACAGAT TAAAACACTC
  TTAATGCCAA AATTTGAATA ACAATTCCCT ATTTTTCTGA ACTGAATTTT GTAGTTTAAT
  R
  TTATTATGCA GCTTTGGATC TGCCTTTTTA AAGAGAGGAA GTTTCTGGAA GCTGAAAAGT
  TTTACCCAAT AATGGTAAAA TACTCTGTAT AATTTCAAGT GTGCCCAACT GGTATTCGGT
  TTTTCATTTT AGTGAACTAT GCTGATGGTG CCATTGTCTC CTAAAATTGT ATTCTACTTG
  GTCATCTTGT AGGGGGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404443	NES11055512	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29996343					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404443	NES11055512	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63237866 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	1476 bp proximal
Gm56066	predicted gene, 56066	551 bp downstream
Platr12	pluripotency associated transcript 12	1521 bp upstream
Rr188	regulatory region 188	916 bp proximal
Rr371405	regulatory region 371405	1269 bp upstream
Tssr7060	transcription start site region 7060	1860 bp upstream
Tssr7061	transcription start site region 7061	1874 bp upstream
Tssr7062	transcription start site region 7062	1886 bp upstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	1651 bp upstream