rs29996408 SNP Detail

Summary

• ID
  rs29996408
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39767616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGCAGATG TCCATAAAGG TTCTACTGGG AGAAGATAAT
  GGACAGGTGA GAATCTCAAG CTGTCAGATC TTTTCTACTG TTCTTCACTC GTGCAGGCAC
  M
  GTATCCGTTG TGTCAAATGA TGCTGAGCGG CAGAGAAAAT GAATGCGCTG CGTGGAAGAG
  TCGGTAAGGC AGTGGGTAGT ATGAAATGGT GAGTGCAGAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49589134	NES12879972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29996408					SNP	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49589134	NES12879972	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39767616 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	within coordinates
Rr575767	regulatory region 575767	227 bp distal
Rr575768	regulatory region 575768	within coordinates
Rr575769	regulatory region 575769	649 bp proximal