rs29996410 SNP Detail

Summary

• ID
  rs29996410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCACCA CCAACAATAC
  AGTGAACAAT GGCAGAAGCT TTCACTACTT TCCCTACCTG TCCATCAAGA GTCAGTAGTT
  GCCCATATGA AGTGGCTTTC TCTGTGGATG CTGGCCACAG TGGGGAATTA TATGCATGGG
  CATTAACTAG GAAGACTTAA CTTGAACTGG AAGGCCTGTA GTTGTCTTTG AGAATAAAAC
  R
  TTAAGCTCTC AATGTCTGAG TGGTGTGATA AAGGCCCAAG AAACTCTTTC TTCCTTCCCG
  CTAATTCTCC TAGCTGCTTC TCAGAGATAG GAAACAGGGG TGATGGTAAC AGCCTGAATT
  CCCGCTCATA AGCCTGGAGC AGCTTTGGAG TTTTAAAAAA GGGCTAGAAT CCCAAGGATA
  AAAGGGCAGA AAAGCTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	MOLF/EiJ	NOD/ShiLtJ
ss49589136	NES12879968	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G
ss134853011	ENSMUSSNP4377854	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	MOLF/EiJ	NOD/ShiLtJ
rs29996410					SNP	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49589136	NES12879968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766999 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	380 bp upstream
Rr575767	regulatory region 575767	within coordinates
Rr575768	regulatory region 575768	391 bp proximal
Rr575769	regulatory region 575769	1266 bp proximal