rs29996411 SNP Detail

Summary

• ID
  rs29996411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACTGGAAG GAGAGTAGTG GTAAAAGCCA GCAGGAGCAC
  CACCAACAAT ACAGTGAACA ATGGCAGAAG CTTTCACTAC TTTCCCTACC TGTCCATCAA
  R
  AGTCAGTAGT TGCCCATATG AAGTGGCTTT CTCTGTGGAT GCTGGCCACA GTGGGGAATT
  ATATGCATGG GCATTAACTA GGAAGACTTA ACTTGAACTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49589137	NES12879966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29996411					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49589137	NES12879966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766867 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	512 bp upstream
Rr575767	regulatory region 575767	22 bp proximal
Rr575768	regulatory region 575768	523 bp proximal
Rr575769	regulatory region 575769	1398 bp proximal