rs29996681 SNP Detail

Summary

• ID
  rs29996681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30310389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGGAAG TGATGTTTAA
  AGAGGACCCT GTCTTTGGGT ATGAGAGCCT GCCACTAAAC ACAGAGAATG TCAAAGGGCC
  AAAGACAATG ATCGTAGATC CAGGATCACA CAAGTCAATT TTATGAGGGA CCTGTGTCCA
  GAACCAAGTC ATGGGTCCCA GAACTCCAAG TCAGGAGAAA GTGGTCTATA TGCTGAGTTA
  R
  ACAGATGTGG GTCAAAACTA GTTGGAATGT GCCTGACTTT TCTAAAACCC TAGAGCATTT
  TCAAGGTCCA TTAACAAACT GTCCAGTCAT CAGTAGCCAG CACACTATGC CAGGCTGACT
  GCTTAATAGT GTTAACCTAA AGGGTTTGTG ACACACAACA GGGCCATGTG ACATGCAAAA
  TGGAAAGTTA ATAGCCACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49089307	NES12419142	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29996681					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089307	NES12419142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30310389 () rs orientation: forward

Symbol	Name	Function Class
Gm61363	predicted gene, 61363	293 bp upstream
Rr388193	regulatory region 388193	1945 bp downstream